SNP Profiles of LF 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CC	CC	AA	AG	CT	CC	CT	CT	GG	CT	CC	CT
1._GC-08-285-8-57	AA	AA	CC	CC	AA	AG	CT	CC	CT	CT	GG	CT	CC	CT
2._GC-08-285-8-57	AA	AA	CC	CC	AA	AG	CT	CC	CT	CT	GG	CT	CC	CT
3._GC-08-285-8-57	AA	AA	CC	CC	AA	AG	CT	CC	CT	CT	GG	CT	CC	CT
4._LF_1	AA	AA	CC	CC	_	_	_	_	CT	CT	GG	_	CC	_
5._LF_1	AA	AA	CC	CC	_	_	_	_	CT	CT	GG	_	CC	_
6._LF_1	AA	AA	CC	CC	_	_	_	_	CT	CT	GG	_	CC	_
7._LF_1	AA	AA	CC	CC	_	_	_	_	CT	CT	GG	_	CC	_
8._LF_1	AA	AA	CC	CC	_	_	_	_	CT	CT	GG	_	CC	_
9._RUQ_17	_	_	CC	CC	_	_	CC	_	CT	_	_	CT	-	_
10._RUQ_17	_	_	_	CC	_	_	CC	_	_	_	_	_	_	_
11._RUQ_17	AA	AA	_	CC	AA	AG	_	GG	AG	_	GG	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AA	TT	GG
1._GC-08-285-8-57	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AA	TT	GG
2._GC-08-285-8-57	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AA	TT	GG
3._GC-08-285-8-57	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AA	TT	GG
4._LF_1	_	_	_	AA	_	_	GG	_	_	_	_	AA	TT	_
5._LF_1	_	_	_	AA	_	_	GG	_	_	_	_	AA	TT	_
6._LF_1	_	_	_	AA	_	_	GG	_	_	_	_	AA	TT	_
7._LF_1	_	_	_	AA	_	_	GG	_	_	_	_	AA	TT	_
8._LF_1	_	_	_	AA	_	_	GG	_	_	_	_	AA	TT	_
9._RUQ_17	_	_	_	_	_	CG	_	_	_	_	AG	_	TT	GG
10._RUQ_17	_	_	_	AA	TT	_	_	_	_	_	_	_	_	_
11._RUQ_17	AT	CC	AA	AA	CC	_	GG	AG	AA	AA	AG	AA	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	AA	CC	TT	AG	CC	AC	AG	GT	GG	GT	GG	CC	AA
1._GC-08-285-8-57	CC	AA	CC	TT	AG	CC	AC	AG	GT	GG	GT	GG	CC	AA
2._GC-08-285-8-57	CC	AA	CC	TT	AG	CC	AC	AG	GT	GG	GT	GG	CC	AA
3._GC-08-285-8-57	CC	AA	CC	TT	AG	CC	AC	AG	GT	GG	GT	GG	CC	AA
4._LF_1	CC	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
5._LF_1	CC	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
6._LF_1	CC	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
7._LF_1	CC	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
8._LF_1	CC	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
9._RUQ_17	CC	_	_	_	AG	-	AC	AG	GT	_	_	GG	-	_
10._RUQ_17	CC	_	_	_	_	CC	_	AG	_	_	_	_	CC	_
11._RUQ_17	GG	AA	GG	AA	AG	CC	AC	AG	AC	CC	AC	GG	GG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	TT	AA	CC	GG	AA	GG	TT	CC	GG	GG	GG	TT	CT
1._GC-08-285-8-57	CC	TT	AA	CC	GG	AA	GG	TT	CC	GG	GG	GG	TT	CT
2._GC-08-285-8-57	CC	TT	AA	CC	GG	AA	GG	TT	CC	GG	GG	GG	TT	CT
3._GC-08-285-8-57	CC	TT	AA	CC	GG	AA	GG	TT	CC	GG	GG	GG	TT	CT
4._LF_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CT
5._LF_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CT
6._LF_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CT
7._LF_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CT
8._LF_1	_	_	_	CC	_	_	_	_	_	_	_	_	_	CT
9._RUQ_17	_	TT	AA	_	_	AA	_	_	_	_	_	_	CT	CT
10._RUQ_17	_	_	_	_	_	AA	_	_	_	_	_	_	_	_
11._RUQ_17	GG	AA	_	GG	_	AA	AG	AA	_	GG	GG	CC	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GT	AG	GG	CC	TT	CC	GG	AG	AA	GG	GG	TT	AA
1._GC-08-285-8-57	CC	GT	AG	GG	CC	TT	CC	GG	AG	AA	GG	GG	TT	AA
2._GC-08-285-8-57	CC	GT	AG	GG	CC	TT	CC	GG	AG	AA	GG	GG	TT	AA
3._GC-08-285-8-57	CC	GT	AG	GG	CC	TT	CC	GG	AG	AA	GG	GG	TT	AA
4._LF_1	CC	_	_	GG	_	TT	CC	GG	_	AA	GG	GG	TT	_
5._LF_1	CC	_	_	GG	_	TT	CC	GG	_	AA	GG	GG	TT	_
6._LF_1	CC	_	_	GG	_	TT	CC	GG	_	AA	GG	GG	TT	_
7._LF_1	CC	_	_	GG	_	TT	CC	GG	_	AA	GG	GG	TT	_
8._LF_1	CC	_	_	GG	_	TT	CC	GG	_	AA	GG	GG	TT	_
9._RUQ_17	_	GT	-	GG	CC	TT	CC	_	AG	AA	GG	GG	TT	AA
10._RUQ_17	_	_	AG	_	_	_	_	_	_	AA	GG	_	TT	AA
11._RUQ_17	GG	AC	AG	CC	GG	AA	CC	GG	AG	AA	GG	CC	AA	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	CC	TT	AC	AG	AA	AA	GG	CC	CC	TT	AT	AC	CT
1._GC-08-285-8-57	CC	CC	TT	AC	AG	AA	AA	GG	CC	CC	TT	AT	AC	CT
2._GC-08-285-8-57	CC	CC	TT	AC	AG	AA	AA	GG	CC	CC	TT	AT	AC	CT
3._GC-08-285-8-57	CC	CC	TT	AC	AG	AA	AA	GG	CC	CC	TT	AT	AC	CT
4._LF_1	_	_	TT	_	_	_	_	_	CC	CC	_	_	_	CT
5._LF_1	_	_	TT	_	_	_	_	_	CC	CC	_	_	_	CT
6._LF_1	_	_	TT	_	_	_	_	_	CC	CC	_	_	_	CT
7._LF_1	_	_	TT	_	_	_	_	_	CC	CC	_	_	_	CT
8._LF_1	_	_	TT	_	_	_	_	_	CC	CC	_	_	_	CT
9._RUQ_17	_	_	_	_	_	_	_	_	CC	CC	_	_	AC	CT
10._RUQ_17	_	_	_	_	_	_	_	_	AC	CC	_	_	AC	_
11._RUQ_17	_	_	AA	AC	AG	AA	AA	_	CC	_	AA	AT	AC	AG

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CC	TT	GG	CC	TT	GG	TT	TT	GG	X_X	X_X	X_X	X_X
1._GC-08-285-8-57	CT	CC	TT	GG	CC	TT	GG	TT	TT	GG	X_X	X_X	X_X	X_X
2._GC-08-285-8-57	CT	CC	TT	GG	CC	TT	GG	TT	TT	GG	X_X	X_X	X_X	X_X
3._GC-08-285-8-57	CT	CC	TT	GG	CC	TT	GG	TT	TT	GG	X_X	X_X	X_X	X_X
4._LF_1	CT	CC	_	GG	_	TT	GG	TT	_	_	X_X	X_X	X_X	X_X
5._LF_1	CT	CC	_	GG	_	TT	GG	TT	_	_	X_X	X_X	X_X	X_X
6._LF_1	CT	CC	_	GG	_	TT	GG	TT	_	_	X_X	X_X	X_X	X_X
7._LF_1	CT	CC	_	GG	_	TT	GG	TT	_	_	X_X	X_X	X_X	X_X
8._LF_1	CT	CC	_	GG	_	TT	GG	TT	_	_	X_X	X_X	X_X	X_X
9._RUQ_17	_	_	_	GG	CC	TT	-	_	_	_	X_X	X_X	X_X	X_X
10._RUQ_17	_	CC	_	_	CC	_	GG	_	_	_	X_X	X_X	X_X	X_X
11._RUQ_17	AG	_	AA	_	_	AA	_	AA	AA	GG	X_X	X_X	X_X	X_X

Input profile: LF_1 GC-08-285-8-57

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

1._LF_1 GC-08-285-8-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._LF_1 GC-08-285-8-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._LF_1 GC-08-285-8-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 8

Dapeng Zhang, 2016

5._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 7

Dapeng Zhang, 2016

6._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 4

Dapeng Zhang, 2016

7._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._LF_1

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0298

Dapeng Zhang, 2016

9._LF_1 RUQ_17

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._LF_1 RUQ_17

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

11._LF_1 RUQ_17

50.6 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240